Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GDI0163Putative signalling protein, GGDEF family. (390 aa)    
Predicted Functional Partners:
GDI3812
Putative signalling protein, GGDEF family.
 
0.899
GDI1168
Conserved protein.
  
 
  0.853
GDI0278
Conserved hypothetical protein.
  
 
  0.840
prfB
Peptide chain release factor 2.
  
    0.798
GDI3665
Putative signalling protein, GGDEF family.
 
0.756
GDI2275
Putative signalling protein, GGDEF family.
 
0.715
ribAB
Putative 3,4-dihydroxy-2-butanone 4 phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
     
  0.707
GDI0833
Putative signalling protein, GGDEF family.
 
0.690
GDI3286
Putative two-component sensor histidine kinase/response regulator hybrid protein.
 
 
 0.682
GDI1867
Putative signalling protein, GGDEF family.
 
 
0.666
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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