STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI0179Putative transglutaminase-like protein. (300 aa)    
Predicted Functional Partners:
GDI0178
Conserved hypothetical protein.
 
  
 0.975
GDI0174
Conserved hypothetical protein.
  
 0.961
GDI0175
Conserved protein.
 
  
 0.887
GDI2327
Conserved hypothetical protein.
 
     0.782
GDI0177
Conserved hypothetical protein.
 
     0.727
GDI0176
Putative transglutaminase-like protein.
 
    
0.647
kat
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
   0.543
katA
Putative ParB-like nuclease (pseudogene).
   
   0.522
katE
Putative catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
   0.522
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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