STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LysR-5Putative transcriptional regulator, family LysR; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
LysR-10
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.774
LysR-15
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.771
LysR-13
Putative transcriptional regulator, LysR family.
  
     0.762
GDI1105
Putative HTH-type transcriptional regulator benM (Ben and cat opero transcriptional regulator); Belongs to the LysR transcriptional regulatory family.
  
     0.760
GDI1005
Putative transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.750
LysR-6
Putative transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.743
LysR-12
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.700
LysR-19
Putative transcriptional regulator LysR; Belongs to the LysR transcriptional regulatory family.
  
     0.693
GDI0193
Putative demethylmenaquinone methyltransferase protein.
       0.598
GDI0192
Putative sugar transporter.
       0.555
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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