STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI0247Putative ABC-type transporter, substrate binding protein. (562 aa)    
Predicted Functional Partners:
GDI0249
Putative dipeptide transport system permease protein.
 0.982
GDI0248
Putative inner membrane ABC transporter permease protein.
 0.980
GDI0250
Putative ABC transporter ATP-binding protein.
 
 0.967
luxA
Alkanal monooxygenase.
 
     0.935
GDI0464
Putative ABC transporter, permease protein.
 0.900
GDI3533
Putative transport/binding protein.
 0.898
GDI0465
Putative ABC transporter, permease protein.
 0.881
oppD
Putative peptide ABC transport protein; Belongs to the ABC transporter superfamily.
 
 0.875
GDI3535
Putative peptide bind protein.
  
  
  0.860
oppF
Putative peptide ABC transport protein; Belongs to the ABC transporter superfamily.
 
 0.850
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.