STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI0299Putative signalling protein, GGDEF family. (570 aa)    
Predicted Functional Partners:
GDI3812
Putative signalling protein, GGDEF family.
 
0.950
GDI1867
Putative signalling protein, GGDEF family.
0.924
GDI3640
Putative signalling protein, GGDEF family.
0.874
GDI1168
Conserved protein.
 
0.754
GDI3665
Putative signalling protein, GGDEF family.
  
 
0.707
GDI3168
Putative signalling protein, GGDEF family.
0.697
GDI0873
Putative signalling protein, GGDEF family.
 
0.680
mcpA-2
Putative chemoreceptor mcpA.
  
 0.680
nrgA
Putative ammonia channel precursor (Ammonia transporter).
 
      0.666
amtB
Putative ammonium transporter.
 
      0.642
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.