Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GDI0387Conserved hypothetical protein. (479 aa)    
Predicted Functional Partners:
GDI1026
Putative transcriptional regulator protein.
  
     0.686
LysR-15
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.625
GDI3513
Conserved hypothetical protein.
  
     0.612
GDI3549
Putative membrane protein.
  
     0.604
GDI0750
Conserved hypothetical protein.
  
     0.598
GDI2517
Nucleoside diphosphate hydrolase.
  
     0.592
LysR-2
Putative transcriptional regulator, LysR family.
  
     0.582
rbsK
Putative ribokinase.
  
     0.522
GDI1107
Putative transcriptional regulator protein, TetR family.
  
     0.482
GDI0405
Conserved hypothetical protein.
  
     0.468
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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