STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI0404Conserved protein. (185 aa)    
Predicted Functional Partners:
GDI1503
Dihydroorotate dehydrogenase.
    
  0.809
ribF
Putative riboflavin biosynthesis protein; Belongs to the ribF family.
    
  0.710
nrtB
Putative nitrate transport permease protein nrtB.
 
 
  0.677
GDI0656
Putative nitroreductase protein.
  
 
  0.587
GDI2396
Putative fatty acid synthase.
    
 0.560
luxA
Alkanal monooxygenase.
  
 
 0.554
GDI3105
Putative oxidoreductase protein.
  
 
 0.554
GDI2560
Conserved hypothetical protein.
    
 0.530
GDI0403
Conserved hypothetical protein.
       0.493
GDI0649
Putative exported protein.
  
     0.473
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.