STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cybBPutative cytochrome protein. (191 aa)    
Predicted Functional Partners:
katE
Putative catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
 
     0.931
GDI1481
Conserved hypothetical protein; Belongs to the UPF0312 family.
  
 0.806
GDI0469
Putative pirin-like protein; Belongs to the pirin family.
       0.773
ada
Putative regulatory protein ada (Regulatory protein of adaptative response).
       0.601
GDI0463
Putative extracellular solute-binding protein.
       0.551
GDI0464
Putative ABC transporter, permease protein.
       0.551
GDI0465
Putative ABC transporter, permease protein.
       0.551
GDI0466
Putative ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.551
GDI1483
Conserved hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.468
argE
Putative acetylornithine deacetylase.
       0.418
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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