STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI0481Putative type II secretion pathway kinase GspE. (567 aa)    
Predicted Functional Partners:
lsdF
Putative general secretion pathway protein F.
 
 0.999
GDI0479
Putative pseudopilin G precursor.
 
 0.995
lsdH
Putative pseudopilin H precursor.
 
 0.989
lsdI
Putative pseudopilin I precursor.
 
 0.988
lsdL
Putative general secretion pathway protein L.
 
 
 
 0.987
gspO
Putative prepilin peptidase and N-methyltransferase O; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.977
lsdD
Putative general secretion pathway protein D.
 
  
 0.931
lsdK
Putative general secretion pathway protein K.
 
  
 0.884
lsdJ
Putative pseudopilin J precursor.
     
 0.856
GDI1703
Putative flagellar fliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.732
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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