STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsdDPutative general secretion pathway protein D. (772 aa)    
Predicted Functional Partners:
lsdK
Putative general secretion pathway protein K.
 
   
 0.964
lsdL
Putative general secretion pathway protein L.
 
  
 0.961
lsdF
Putative general secretion pathway protein F.
 
  
 0.940
GDI0479
Putative pseudopilin G precursor.
 
  
 0.931
GDI0481
Putative type II secretion pathway kinase GspE.
 
  
 0.931
gspO
Putative prepilin peptidase and N-methyltransferase O; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.895
lsdI
Putative pseudopilin I precursor.
 
  
 0.892
lsdH
Putative pseudopilin H precursor.
 
  
 0.881
lsdM
Putative general secretion pathway protein M.
       0.795
bfpH
Putative BfpH protein (involved in biogenesis of type IV pili).
 
  
 0.792
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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