STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI0554Conserved hypothetical protein. (359 aa)    
Predicted Functional Partners:
GDI0553
Putative TonB-dependent receptor.
 
     0.734
GDI1434
TonB-dependent receptor.
  
     0.594
GDI0552
TonB-dependent receptor.
 
     0.552
oprB-4
Putative carbohydrate-selective porin.
  
     0.504
oprB
oprB; Porin b precursor (outer membrane protein d1) (glucose porin); putative carbohydrate-selective porin.
  
     0.498
GDI1425
Putative membrane protein.
  
     0.492
GDI3758
Putative tonB-dependent receptor.
  
     0.487
GDI0705
Conserved hypothetical protein.
  
     0.484
GDI1038
Conserved hypothetical protein.
  
     0.435
oprB-3
Putative carbohydrate-selective porin.
  
     0.427
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.