Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GDI0605Putative sugar transporter. (457 aa)    
Predicted Functional Partners:
GDI0606
Putative beta-N-acetylhexosaminidase.
 
     0.926
LacI
Putative transcriptional regulator, LacI family.
 
   
 0.609
GDI2578
Putative glucose-resistance amylase regulator.
 
   
 0.578
fruR
Putative fructose repressor.
 
   
 0.530
nagA
Putative N-acetylglucosamine-6-phosphate deacetylase.
 
   
 0.519
LacI-3
Putative transcriptional regulator lacI family.
 
   
 0.513
GDI0604
Putative lysine exporter protein.
       0.474
GDI3720
Putative transmembrane transport protein.
  
     0.462
kefB
Putative glutathione-regulated potassium-efflux system protein kefB.
  
     0.457
GDI1307
Peptidase.
  
     0.452
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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