Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GDI0705Conserved hypothetical protein. (432 aa)    
Predicted Functional Partners:
GDI0552
TonB-dependent receptor.
  
     0.754
GDI2309
Conserved hypothetical protein.
  
     0.738
GDI1515
Putative type I secretion outer membrane protein, TolC.
  
     0.727
bamD
Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.702
GDI1171
Putative membrane protein.
  
     0.701
mip
Putative peptidyl-prolyl cis-trans isomerase Mip precursor.
    
 
 0.699
oprB-3
Putative carbohydrate-selective porin.
  
     0.674
GDI1434
TonB-dependent receptor.
  
     0.670
GDI0553
Putative TonB-dependent receptor.
  
     0.662
oprB
oprB; Porin b precursor (outer membrane protein d1) (glucose porin); putative carbohydrate-selective porin.
  
     0.659
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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