Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GDI0975Putative integrase. (410 aa)    
Predicted Functional Partners:
GDI0976
Putative insertion sequence.
 
   0.961
istB
Putative transposase.
 
 
   0.806
GDI3574
Transposase (pseudogene).
 
 
   0.784
GDI0977
Conserved hypothetical protein.
       0.773
GDI0411
Putative integrase (fragment).
 
 
   0.748
GDI1590
IstB-like ATP-binding protein.
 
 
   0.748
GDI2423
Putative transposase.
 
 
   0.748
GDI2606
Putative IstB-like ATP-binding protein.
 
 
   0.748
GDI2704
Putative transposase.
 
 
   0.748
GDI3806
Putative integrase (pseudogene).
 
 
   0.748
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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