Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
trbJ-2Putative conjugal transfer protein; TrbJ. (248 aa)    
Predicted Functional Partners:
trbE-2
Putative conjugal transfer protein trbE.
 
 0.972
trbD-2
Putative conjugal transfer protein; TrbD.
 
  
  0.957
trbC-2
Conjugal transfer protein TrbC.
 
  
  0.956
trbL-2
Putative conjugal transfer protein; TrbL.
 
  
  0.908
trbI-2
Putative conjugation TrbI-like protein.
 
 
  0.892
trbF-2
Putative conjugal transfer protein; TrbF.
 
  
  0.891
trbE
Putative conjugal transfer protein trbE.
 
 
 0.882
trbE-4
Putative conjugal transfer protein trbE.
 
 
 0.882
trbG-2
Putative conjugal transfer protein trbG.
 
  
  0.877
trbL
Putative type IV secretion system protein.
 
  
  0.850
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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