STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI1200Oxidoreductase protein. (334 aa)    
Predicted Functional Partners:
IolB
Putative myo-inositol catabolism protein.
 
  
 0.753
iolE
Putative Sugar phosphate isomerases/epimerases.
 
 
 0.748
GDI0611
Putative xylose isomerase.
  
 
 0.635
GDI2023
Putative aminotransferase protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.633
iolC
Putative myo-inositol catabolism, sugar kinase protein.
 
 
 0.598
GDI0528
Conserved hypothetical protein.
   
 
  0.592
nmrA
Putative transcriptional regulator.
   
 
  0.592
GDI1975
Putative transcriptional regulator NmrA-like.
   
 
  0.592
GDI2113
Putative NAD-dependent epimerase/dehydratase.
   
 
  0.592
GDI1081
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.591
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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