ccmB protein (Gluconacetobacter diazotrophicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ccmB

Putative Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. (226 aa)

Predicted Functional Partners:

ccmA

0.999

cycZ

0.998

ccmE

0.982

cycK

0.879

cycY

0.879

cytC

0.840

GDI1246

0.464

acnA

0.441

GDI3444

0.424

GDI0860

0.413

Your Current Organism:

Gluconacetobacter diazotrophicus

NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GDI0860	ccmB	GDI0860	GDI1353	Puative alcohol dehydrogenase cytochrome c subunit precursor.	Putative Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	0.413
GDI0860	ccmE	GDI0860	GDI3440	Puative alcohol dehydrogenase cytochrome c subunit precursor.	Putative cytochrome C biosynthesis heme-carrier protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH (By similarity). Also required for indole-3-acetic acid (IAA) biosynthesis. Belongs to the CcmE/CycJ family.	0.585
GDI1246	ccmA	GDI1246	GDI1354	Putative ABC transporter protein.	Putative cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	0.534
GDI1246	ccmB	GDI1246	GDI1353	Putative ABC transporter protein.	Putative Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	0.464
GDI1246	cycZ	GDI1246	GDI3438	Putative ABC transporter protein.	Putative heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.	0.475
GDI3444	ccmA	GDI3444	GDI1354	Conserved hypothetical protein.	Putative cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	0.465
GDI3444	ccmB	GDI3444	GDI1353	Conserved hypothetical protein.	Putative Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	0.424
GDI3444	ccmE	GDI3444	GDI3440	Conserved hypothetical protein.	Putative cytochrome C biosynthesis heme-carrier protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH (By similarity). Also required for indole-3-acetic acid (IAA) biosynthesis. Belongs to the CcmE/CycJ family.	0.884
GDI3444	cycK	GDI3444	GDI3441	Conserved hypothetical protein.	Putative cytochrome c-type biogenesis protein cycK.	0.969
GDI3444	cycY	GDI3444	GDI3442	Conserved hypothetical protein.	Putative thioredoxin disulfide isomerase.	0.969
GDI3444	cycZ	GDI3444	GDI3438	Conserved hypothetical protein.	Putative heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.	0.849
GDI3444	cytC	GDI3444	GDI3443	Conserved hypothetical protein.	Putative Cytochrome c-type biogenesis protein; Possible subunit of a heme lyase.	0.936
acnA	ccmA	GDI1355	GDI1354	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	Putative cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	0.443
acnA	ccmB	GDI1355	GDI1353	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	Putative Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	0.441
ccmA	GDI1246	GDI1354	GDI1246	Putative cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Putative ABC transporter protein.	0.534
ccmA	GDI3444	GDI1354	GDI3444	Putative cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Conserved hypothetical protein.	0.465
ccmA	acnA	GDI1354	GDI1355	Putative cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.443
ccmA	ccmB	GDI1354	GDI1353	Putative cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Putative Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.	0.999
ccmA	ccmE	GDI1354	GDI3440	Putative cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Putative cytochrome C biosynthesis heme-carrier protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH (By similarity). Also required for indole-3-acetic acid (IAA) biosynthesis. Belongs to the CcmE/CycJ family.	0.970
ccmA	cycK	GDI1354	GDI3441	Putative cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.	Putative cytochrome c-type biogenesis protein cycK.	0.832

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About