STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI1491Putative haloacid dehalogenase-like hydrolase. (279 aa)    
Predicted Functional Partners:
GDI1489
Conserved hypothetical protein.
 
     0.913
GDI1490
Putative carbohydrate kinase protein.
 
  
 0.883
arsR
Putative transcriptional regulator arsR.
 
     0.612
GDI2396
Putative fatty acid synthase.
    
 0.583
GDI1487
Putative carbohydrate kinase.
    
 0.544
rbsB
D-ribose-binding protein.
       0.508
GDI0283
Conserved protein.
  
 
  0.506
GDI0459
Putative haloalkanoic acid dehalogenase.
     
 0.498
GDI3539
Putative alpha/beta hydrolase.
  
  
  0.461
GDI3757
Putative glycerophosphoryl diester phosphodiesterase.
    
  0.459
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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