STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkJPutative alcohol dehydrogenase. (531 aa)    
Predicted Functional Partners:
GDI0860
Puative alcohol dehydrogenase cytochrome c subunit precursor.
   
   0.981
GDI2365
Conserved hypothetical protein.
    
  0.920
GDI1528
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
  0.873
GDI0283
Conserved protein.
    
 0.840
GDI3361
Hypothetical protein.
    
 0.840
adhB
Putative alcohol dehydrogenase cytochrome c subunit precursor.
    
 
 0.803
adhB-2
Putative alcohol dehydrogenase cytochrome c subunit.
    
 
 0.803
adhB-3
Putative alcohol dehydrogenase cytochrome c subunit precursor.
   
 
 0.803
gabD
Succinate-semialdehyde dehydrogenase.
 
 
 
 0.776
gabD-2
Putative succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 
 0.776
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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