STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI1838Thioredoxin protein. (205 aa)    
Predicted Functional Partners:
GDI1459
Putative membrane protein.
  
 
 0.916
GDI0917
Putative membrane protein.
 
 
 0.895
smc
Putative chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
     
 0.749
recO
Putative DNA repair protein recO; Involved in DNA repair and RecF pathway recombination.
  
     0.702
imp
Organic solvent tolerance protein precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.689
GDI2067
Putative transporter protein.
  
     0.663
GDI1728
Conserved protein.
  
     0.647
GDI2011
Putative DNA replication.
  
     0.643
GDI0715
Putative UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.627
GDI1401
Putative transcriptional Regulator.
  
     0.604
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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