STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobT-2Putative cobalamin biosynthesis protein cobT. (633 aa)    
Predicted Functional Partners:
cobS-2
Cobalt chelatase, pCobS small subunit; Putative aerobic cobaltochelatase cobS subunit (EC 6.6.1.2) (Hydrogenobyrini acid a,c-diamide cobaltochelatase cobS subunit.
 
 
 0.990
dnaJ-3
Putative chaperone protein dnaJ.
 
     0.721
GDI1196
Conserved hypothetical protein.
  
     0.680
GDI0700
Putative GcrA cell cycle regulator.
  
     0.635
GDI0714
Conserved hypothetical protein.
  
     0.625
GDI2029
Putative helicase.
  
     0.612
GDI0869
Conserved hypothetical protein.
  
     0.590
GDI1728
Conserved protein.
  
     0.584
GDI1364
Conserved hypothetical protein.
  
     0.583
GDI0911
Putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1.
  
     0.573
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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