Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GDI1999Conserved hypothetical protein. (484 aa)    
Predicted Functional Partners:
GDI1992
Conserved hypothetical protein.
 
 
  0.930
xdhB
Putative xanthine dehydrogenase/oxidase.
  
 
  0.872
xdhA
Putative xanthine dehydrogenase, xdhA.
    
  0.853
gatA-2
Putative glutamyl-tRNA(Gln) amidotransferase subunit A.
 
  
  0.696
GDI1994
Putative serine-pyruvate aminotransferase.
 
    0.671
GDI2999
Putative succinylglutamate desuccinylase.
  
     0.641
GDI1993
Putative polysaccharide deacetylase.
       0.596
GDI1998
Hypothetical protein.
       0.588
ggt
Putative gamma-glutamyltranspeptidase precursor.
  
 
  0.546
GDI1995
N-carbamoyl-L-amino acid hydrolase.
       0.542
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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