STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSPutative Lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (540 aa)    
Predicted Functional Partners:
GDI2045
Putative membrane protein.
    
  0.839
GDI1728
Conserved protein.
  
    0.774
GDI0869
Conserved hypothetical protein.
  
     0.725
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.656
GDI2037
Putative membrane protein; Belongs to the BI1 family.
  
     0.653
GDI2047
Putative Helicase.
       0.619
GDI2067
Putative transporter protein.
  
     0.619
rpmI
Putative 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
    0.613
recO
Putative DNA repair protein recO; Involved in DNA repair and RecF pathway recombination.
  
     0.597
GDI2029
Putative helicase.
  
     0.568
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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