Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ctrDCapsule polysaccharide export ATP-binding protein ctrD. (215 aa)    
Predicted Functional Partners:
ctrC
Putative capsule polysaccharide export inner-membrane protein ctrC.
 0.999
ctrB
Putative capsule polysaccharide export inner-membrane protein ctrB.
 
 
 0.995
rfbD
Putative ABC transporter.
 
 0.988
kpsC
Putative capsule polysaccharide export protein kpsC.
 
  
 0.959
ctrA
Putative polysaccharide export protein.
 
  
 0.959
kspS
Putative capsule polysaccharide export protein kpsS.
 
   
 0.908
GDI2412
Putative glycosyl transferase, group 1.
 
   0.826
GDI3371
Putative glycosyl transferase.
 
  
 0.804
GDI2402
Putative capsular polysaccharide biosynthesis protein.
 
   
 0.799
exoF
Putative exopolysaccharide production protein exoF.
  
  
 0.797
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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