STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exoOPutative succinoglycan biosynthesis protein exoO. (325 aa)    
Predicted Functional Partners:
gumJ
Putative lipopolysaccharide biosynthesis protein.
 
  
 0.910
GDI2543
Putative colanic acid biosynthesis glycosyl transferase.
 
 
  0.898
gumK
GumK protein.
  
 
 0.885
exoP
Putative succinoglycan biosynthesis transport protein exoP.
 
  
 0.850
exoY
Putative exopolysaccharide production protein exoY.
 
  
 0.839
gumD
Putative polysaccharide biosynthesis glycosyltransferase.
 
  
 0.837
GDI2537
Putative endoglucanase precursor (EC 3.2.1.4) (Endo-1,4-beta-glucanase (Cellulase); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.827
gumE
Putative gumE protein.
     
 0.826
exoF
Putative exopolysaccharide production protein exoF.
 
  
 0.798
gumB
Putative exopolysaccharide production protein.
 
  
 0.794
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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