rbsA-4 protein (Gluconacetobacter diazotrophicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rbsA-4

Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (514 aa)

Predicted Functional Partners:

rbsC-8

0.972

rbsC-3

0.936

rbsC-5

0.936

GDI3728

0.894

GDI3729

0.878

rbsC-4

0.871

xylH

0.869

rbsB-4

0.865

rbsC-2

0.852

GDI1527

0.850

Your Current Organism:

Gluconacetobacter diazotrophicus

NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GDI1527	GDI3729	GDI1527	GDI3729	Putative permease protein.	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.775
GDI1527	rbsA-4	GDI1527	GDI2660	Putative permease protein.	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.850
GDI1527	rbsB-4	GDI1527	GDI2658	Putative permease protein.	D-ribose-binding periplasmic protein precursor.	0.862
GDI1527	rbsC-5	GDI1527	GDI2627	Putative permease protein.	Putative ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.	0.403
GDI3728	GDI3729	GDI3728	GDI3729	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.833
GDI3728	rbsA-4	GDI3728	GDI2660	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.894
GDI3728	rbsB-4	GDI3728	GDI2658	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	D-ribose-binding periplasmic protein precursor.	0.865
GDI3729	GDI1527	GDI3729	GDI1527	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative permease protein.	0.775
GDI3729	GDI3728	GDI3729	GDI3728	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.833
GDI3729	rbsA-4	GDI3729	GDI2660	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.878
GDI3729	rbsB-4	GDI3729	GDI2658	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	D-ribose-binding periplasmic protein precursor.	0.861
GDI3729	rbsC-5	GDI3729	GDI2627	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.	0.409
rbsA-4	GDI1527	GDI2660	GDI1527	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Putative permease protein.	0.850
rbsA-4	GDI3728	GDI2660	GDI3728	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.894
rbsA-4	GDI3729	GDI2660	GDI3729	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Putative transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.878
rbsA-4	rbsB-4	GDI2660	GDI2658	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	D-ribose-binding periplasmic protein precursor.	0.865
rbsA-4	rbsC-2	GDI2660	GDI1492	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.	0.852
rbsA-4	rbsC-3	GDI2660	GDI1493	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.	0.936
rbsA-4	rbsC-4	GDI2660	GDI2441	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Putative ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.	0.871
rbsA-4	rbsC-5	GDI2660	GDI2627	Putative ribose transport ATP-binding protein rbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Putative ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.	0.936

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About