STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI2662Putative amidohydrolases. (275 aa)    
Predicted Functional Partners:
mdlA
Putative mandelate racemase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.963
GDI2664
Putative short chain dehydrogenase.
 
 
  0.913
GDI0605
Putative sugar transporter.
 
  
 0.852
fucU
Fucose operon fucU protein; Belongs to the RbsD / FucU family.
 
     0.837
GDI2666
Putative fumarylacetoacetate (FAA) hydrolase family.
 
     0.835
dapA-3
Putative dihydrodipicolinate synthase; Belongs to the DapA family.
  
  
 0.812
GDI2667
Putative oxidoreductase.
 
 
  0.754
GDI0189
Putative MFS permease.
  
    0.612
GDI0624
Putative transporter protein.
  
    0.612
GDI2668
Putative transcriptional regulator, GntR family.
 
     0.581
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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