STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI2688Conserved hypothetical protein. (254 aa)    
Predicted Functional Partners:
npdA
Putative NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
     0.584
GDI2694
Putative isochorismatase family protein rutB.
  
   0.516
GDI2697
Conserved hypothetical protein.
 
     0.475
GDI0169
Putative DNA ligase-like protein.
 
    0.424
GDI3523
Putative zinc-type alcohol dehydrogenase-like protein.
 
     0.413
GDI2689
Putative transcriptional regulator, GntR family.
       0.400
GDI2690
Putative membrane lipoprotein.
       0.400
GDI2691
Putative ABC transporter, ATP-binding protein.
       0.400
GDI2692
Putative amino acid transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.400
GDI2693
Putative amino acid transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.400
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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