Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
GDI2689Putative transcriptional regulator, GntR family. (291 aa)    
Predicted Functional Partners:
GDI2697
Conserved hypothetical protein.
 
     0.912
GDI2690
Putative membrane lipoprotein.
 
    0.840
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.833
rbsK
Putative ribokinase.
 
  
 0.829
GDI2694
Putative isochorismatase family protein rutB.
 
     0.807
GDI2691
Putative ABC transporter, ATP-binding protein.
  
    0.790
udp
Putative uridine phosphorylase.
       0.778
GDI2692
Putative amino acid transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.777
GDI2693
Putative amino acid transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.777
gabD-4
Putative succinate-semialdehyde dehydrogenase [NADP+].
       0.773
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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