STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaCPutative 4-carboxymuconolactone decarboxylase. (138 aa)    
Predicted Functional Partners:
GDI2847
Putative carboxymuconolactone decarboxylase.
 
  
  0.835
pcaB
Putative transposase (fragment).
 
 
 0.711
ahpC-2
Putative alkyl hydroperoxide reductase.
       0.565
purB
Ptative adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.513
GDI2166
6-phosphogluconate dehydrogenase, NAD-binding.
  
 
  0.489
GDI0522
Lipase protein.
     
 0.476
GDI1720
Putative pyruvate dehydrogenase E2 component.
    
 0.476
pip
Putative proline iminopeptidase; Belongs to the peptidase S33 family.
     
 0.476
GDI3112
Putative alpha/beta hydrolase; Belongs to the peptidase S33 family.
     
 0.476
GDI2396
Putative fatty acid synthase.
 
   
 0.458
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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