Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GDI2775 | GDI2776 | GDI2775 | GDI2776 | Hypothetical protein. | Putative transcriptional Regulator, LysR family. | 0.558 |
GDI2775 | gst-4 | GDI2775 | GDI2774 | Hypothetical protein. | Putative glutathionine S-transferase. | 0.773 |
GDI2775 | nemA | GDI2775 | GDI2773 | Hypothetical protein. | Putative N-ethylmaleimide reductase, FMN-linked. | 0.697 |
GDI2776 | GDI2775 | GDI2776 | GDI2775 | Putative transcriptional Regulator, LysR family. | Hypothetical protein. | 0.558 |
GDI2776 | gst-4 | GDI2776 | GDI2774 | Putative transcriptional Regulator, LysR family. | Putative glutathionine S-transferase. | 0.616 |
GDI2776 | nemA | GDI2776 | GDI2773 | Putative transcriptional Regulator, LysR family. | Putative N-ethylmaleimide reductase, FMN-linked. | 0.508 |
GDI3206 | gst-4 | GDI3206 | GDI2774 | Conserved hypothetical protein. | Putative glutathionine S-transferase. | 0.753 |
GDI3206 | rpoA | GDI3206 | GDI3380 | Conserved hypothetical protein. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.757 |
GDI3206 | rpoB | GDI3206 | GDI3410 | Conserved hypothetical protein. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.686 |
GDI3206 | rpoC | GDI3206 | GDI3409 | Conserved hypothetical protein. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.805 |
GDI3206 | rpoD-2 | GDI3206 | GDI3335 | Conserved hypothetical protein. | RNA polymerase sigma factor rpoD (Sigma-A); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.565 |
GDI3206 | rpoH | GDI3206 | GDI2254 | Conserved hypothetical protein. | Putative RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.565 |
GDI3206 | rpoZ | GDI3206 | GDI2157 | Conserved hypothetical protein. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.725 |
gst-4 | GDI2775 | GDI2774 | GDI2775 | Putative glutathionine S-transferase. | Hypothetical protein. | 0.773 |
gst-4 | GDI2776 | GDI2774 | GDI2776 | Putative glutathionine S-transferase. | Putative transcriptional Regulator, LysR family. | 0.616 |
gst-4 | GDI3206 | GDI2774 | GDI3206 | Putative glutathionine S-transferase. | Conserved hypothetical protein. | 0.753 |
gst-4 | nemA | GDI2774 | GDI2773 | Putative glutathionine S-transferase. | Putative N-ethylmaleimide reductase, FMN-linked. | 0.721 |
gst-4 | rpoA | GDI2774 | GDI3380 | Putative glutathionine S-transferase. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.757 |
gst-4 | rpoB | GDI2774 | GDI3410 | Putative glutathionine S-transferase. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.686 |
gst-4 | rpoC | GDI2774 | GDI3409 | Putative glutathionine S-transferase. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.805 |
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