Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trbL-3Putative TrbL/VirB6 conjugal transfer protein. (488 aa)    
Predicted Functional Partners:
trbE-4
Putative conjugal transfer protein trbE.
 
  
 0.970
trbJ-4
Putative conjugal transfer protein trbJ.
 
  
  0.964
trbI-5
Putative conjugal transfer protein trbI.
 
  
 0.961
CagX
Putative conjugal transfer protein.
 
  
  0.960
trbF-4
Putative conjugal transfer protein trbF.
 
  
  0.960
trbE
Putative conjugal transfer protein trbE.
 
  
 0.938
trbE-2
Putative conjugal transfer protein trbE.
 
  
 0.936
trbI
Putative type IV secretion system protein.
 
  
 0.923
trbI-2
Putative conjugation TrbI-like protein.
 
  
 0.923
trbI-3
Putative conjugal transfer protein trbI/VirB10.
 
  
 0.923
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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