Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
trbD-4Putative conjugal transfer protein trbD. (91 aa)    
Predicted Functional Partners:
trbE-4
Putative conjugal transfer protein trbE.
  
  0.956
trbC-4
Putative conjugal transfer protein trbC.
 
  
  0.956
trbB-3
Putative conjugal transfer protein trbB.
 
  
 0.921
trbL-3
Putative TrbL/VirB6 conjugal transfer protein.
 
  
  0.917
trbJ-4
Putative conjugal transfer protein trbJ.
 
  
  0.913
trbF-4
Putative conjugal transfer protein trbF.
 
  
  0.906
CagX
Putative conjugal transfer protein.
 
  
  0.885
trbE
Putative conjugal transfer protein trbE.
 
  
  0.830
trbL
Putative type IV secretion system protein.
 
  
  0.830
trbE-2
Putative conjugal transfer protein trbE.
 
  
  0.830
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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