STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI2997Conserved hypothetical protein. (323 aa)    
Predicted Functional Partners:
GDI1445
Putative glycosyl transferase.
  
     0.760
GDI1412
Conserved hypothetical protein.
 
     0.584
GDI0924
Conserved protein.
  
     0.567
GDI2109
Putative ubiquinone biosynthesis protein ubiB.
  
     0.551
rhlE
Putative ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family.
       0.546
kdtA
Putative 3-deoxy-D-manno-octulosonic-acid transferase.
 
     0.545
GDI3244
Putative lipid A biosynthesis lauroyl acyltransferase.
 
     0.510
kdsB
Putative 3-deoxy-manno-octulosonate cytidylyltransferase.
 
     0.487
GDI2140
Conserved hypothetical protein.
 
     0.472
GDI1402
Conserved hypothetical protein.
  
     0.466
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.