STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI3099Putative ABC transporter (pseudogene). (243 aa)    
Predicted Functional Partners:
GDI1174
Conserved hypothetical protein.
 
 
 0.983
nrtB
Putative nitrate transport permease protein nrtB.
 
 
 0.934
rnhA
Putative ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.773
thrB
Putative homoserine kinase; Belongs to the pseudomonas-type ThrB family.
       0.773
ispH
Putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.741
GDI1192
Putative ABC tranporter protein.
  
  
  0.710
GDI3105
Putative oxidoreductase protein.
  
 
 0.636
GDI2186
Thiaminase-2 protein.
 
    0.631
GDI1598
Putative ABC-transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
  0.614
GDI3123
Putative thiamine transport ATP-binding protein.
  
  
  0.609
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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