Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GDI0184 | gltB | GDI0184 | GDI2111 | Thioredoxin protein. | Putative glutamate synthase [NADPH] large chain precursor. | 0.904 |
| GDI0184 | nifU | GDI0184 | GDI0447 | Thioredoxin protein. | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.496 |
| GDI0184 | trxB | GDI0184 | GDI0711 | Thioredoxin protein. | Thioredoxin reductase. | 0.933 |
| GDI0184 | trxB-2 | GDI0184 | GDI3155 | Thioredoxin protein. | Thioredoxin reductase. | 0.946 |
| bedA | fxdB | GDI2681 | GDI2370 | Putative benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit. | Putative 2Fe-2S ferredoxin. | 0.950 |
| bedA | gcvP | GDI2681 | GDI2315 | Putative benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.733 |
| bedA | gltB | GDI2681 | GDI2111 | Putative benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit. | Putative glutamate synthase [NADPH] large chain precursor. | 0.907 |
| bedA | nifU | GDI2681 | GDI0447 | Putative benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit. | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.999 |
| bedA | trxB | GDI2681 | GDI0711 | Putative benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit. | Thioredoxin reductase. | 0.835 |
| bedA | trxB-2 | GDI2681 | GDI3155 | Putative benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit. | Thioredoxin reductase. | 0.835 |
| fxdB | bedA | GDI2370 | GDI2681 | Putative 2Fe-2S ferredoxin. | Putative benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit. | 0.950 |
| fxdB | nifU | GDI2370 | GDI0447 | Putative 2Fe-2S ferredoxin. | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.990 |
| fxdB | trxB | GDI2370 | GDI0711 | Putative 2Fe-2S ferredoxin. | Thioredoxin reductase. | 0.949 |
| fxdB | trxB-2 | GDI2370 | GDI3155 | Putative 2Fe-2S ferredoxin. | Thioredoxin reductase. | 0.912 |
| gcvP | bedA | GDI2315 | GDI2681 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit. | 0.733 |
| gcvP | gltB | GDI2315 | GDI2111 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative glutamate synthase [NADPH] large chain precursor. | 0.944 |
| gcvP | metB | GDI2315 | GDI0780 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative cystathionine gamma-synthase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.766 |
| gcvP | sufS | GDI2315 | GDI3056 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.821 |
| gcvP | trxB | GDI2315 | GDI0711 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Thioredoxin reductase. | 0.853 |
| gcvP | trxB-2 | GDI2315 | GDI3155 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Thioredoxin reductase. | 0.853 |
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