Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GDI2364 | GDI2396 | GDI2364 | GDI2396 | Putative cytochrome P450. | Putative fatty acid synthase. | 0.999 |
| GDI2364 | metW | GDI2364 | GDI3227 | Putative cytochrome P450. | Methionine biosynthesis MetW. | 0.554 |
| GDI2396 | GDI2364 | GDI2396 | GDI2364 | Putative fatty acid synthase. | Putative cytochrome P450. | 0.999 |
| GDI2396 | bioD | GDI2396 | GDI1922 | Putative fatty acid synthase. | Putative biotin synthesis protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.657 |
| GDI2396 | cyp | GDI2396 | GDI2592 | Putative fatty acid synthase. | Putative cytochrome P450. | 0.998 |
| GDI2396 | gcvP | GDI2396 | GDI2315 | Putative fatty acid synthase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.628 |
| GDI2396 | metH | GDI2396 | GDI3502 | Putative fatty acid synthase. | Putative methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.571 |
| GDI2396 | metW | GDI2396 | GDI3227 | Putative fatty acid synthase. | Methionine biosynthesis MetW. | 0.927 |
| GDI3226 | metW | GDI3226 | GDI3227 | Conserved hypothetical protein. | Methionine biosynthesis MetW. | 0.773 |
| GDI3226 | metX | GDI3226 | GDI3228 | Conserved hypothetical protein. | Putative homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. | 0.773 |
| GDI3226 | osmC | GDI3226 | GDI3229 | Conserved hypothetical protein. | Putative peroxiredoxin osmC. | 0.517 |
| bioD | GDI2396 | GDI1922 | GDI2396 | Putative biotin synthesis protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | Putative fatty acid synthase. | 0.657 |
| bioD | gcvP | GDI1922 | GDI2315 | Putative biotin synthesis protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.820 |
| bioD | metH | GDI1922 | GDI3502 | Putative biotin synthesis protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | Putative methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.626 |
| bioD | metW | GDI1922 | GDI3227 | Putative biotin synthesis protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | Methionine biosynthesis MetW. | 0.751 |
| cyp | GDI2396 | GDI2592 | GDI2396 | Putative cytochrome P450. | Putative fatty acid synthase. | 0.998 |
| cyp | metW | GDI2592 | GDI3227 | Putative cytochrome P450. | Methionine biosynthesis MetW. | 0.554 |
| gcvP | GDI2396 | GDI2315 | GDI2396 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative fatty acid synthase. | 0.628 |
| gcvP | bioD | GDI2315 | GDI1922 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative biotin synthesis protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.820 |
| gcvP | metH | GDI2315 | GDI3502 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.617 |
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