Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GDI3422Conserved hypothetical protein. (703 aa)    
Predicted Functional Partners:
GDI3423
Hypothetical protein.
       0.773
GDI2116
Conserved hypothetical protein.
  
     0.759
GDI2335
Putative membrane protein.
 
     0.756
GDI2972
Conserved hypothetical protein.
  
     0.741
GDI2117
Organic solvent tolerance protein.
  
     0.732
GDI3420
Two component Transcriptional regulator.
       0.727
rmuC
Putative DNA recombination protein.
       0.727
GDI2144
Outer membrane protein.
  
     0.705
holA
Putative DNA polymerase III, delta subunit.
 
     0.702
GDI0932
Hypothetical protein.
  
     0.697
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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