STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI3449Putative bacterioferritin. (79 aa)    
Predicted Functional Partners:
BFR
Bacterioferritin; Belongs to the bacterioferritin family.
  
 
 0.976
bedA
Putative benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit.
  
 
 0.944
GDI2684
Putative ferritin-like domain.
  
 
 0.930
gltB
Putative glutamate synthase [NADPH] large chain precursor.
    
 0.907
nifU
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
    
 0.898
GDI3447
Hypothetical protein.
       0.605
GDI3448
Putative membrane protein.
       0.605
GDI3222
Putative transporter protein.
    
 0.604
fxdB
Putative 2Fe-2S ferredoxin.
     
 0.538
nrtB
Putative nitrate transport permease protein nrtB.
    
 0.517
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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