Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GDI3534Putative transport/binding protein. (337 aa)    
Predicted Functional Partners:
oppF
Putative peptide ABC transport protein; Belongs to the ABC transporter superfamily.
 0.999
oppD
Putative peptide ABC transport protein; Belongs to the ABC transporter superfamily.
 0.999
GDI3533
Putative transport/binding protein.
 0.999
GDI3535
Putative peptide bind protein.
 
 0.999
GDI0250
Putative ABC transporter ATP-binding protein.
 0.995
GDI0466
Putative ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.994
GDI0464
Putative ABC transporter, permease protein.
 0.992
GDI0248
Putative inner membrane ABC transporter permease protein.
 0.989
GDI0247
Putative ABC-type transporter, substrate binding protein.
 
 0.961
GDI0463
Putative extracellular solute-binding protein.
 
 0.961
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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