Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GDI3540Putative exported protein. (69 aa)    
Predicted Functional Partners:
GDI0918
Putative membrane protein.
  
    0.594
GDI3369
Putative membrane protein.
  
    0.594
GDI3541
Hypothetical protein.
       0.563
GDI2185
Outer membrane lipoprotein; Growth enhancer.
   
  
 0.516
GDI3544
Conserved hypothetical protein.
     
 0.514
GDI0246
Hypothetical protein.
      
 0.499
GDI0250
Putative ABC transporter ATP-binding protein.
      
 0.499
agaE
Putative deaminase.
      
 0.499
GDI0621
Putative CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
    0.473
GDI1599
Putative membrane protein.
  
    0.473
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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