Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GDI3758Putative tonB-dependent receptor. (814 aa)    
Predicted Functional Partners:
GDI3757
Putative glycerophosphoryl diester phosphodiesterase.
 
     0.849
oprB
oprB; Porin b precursor (outer membrane protein d1) (glucose porin); putative carbohydrate-selective porin.
  
     0.747
GDI2702
TonB-dependent receptor.
  
  
  0.745
GDI3149
Dipeptidyl-peptidase.
  
     0.743
GDI3715
TonB-dependent receptor.
  
  
  0.742
GDI2435
Putative glycyl aminopeptidase.
  
     0.740
GDI0520
Conserved hypothetical protein.
  
   0.739
GDI2924
Hypothetical protein.
  
     0.686
GDI1171
Putative membrane protein.
  
     0.678
GDI1383
Putative membrane protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.669
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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