STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI3839Putative secretion protein, HlyD-family. (327 aa)    
Predicted Functional Partners:
GDI3840
Putative ABC transporter component.
 
  
 0.964
ttgF
Putative outer membrane efflux protein.
 
  0.887
GDI3499
Putative ABC transporter protein.
  
 0.712
GDI0998
Putative secretion protein, HlyD-family.
 
     0.696
tolC
Putative Outer membrane protein tolC precursor.
 
 0.608
GDI2016
Putative outer membrane protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
  0.563
GDI3719
Putative outer membrane protein.
  
 0.557
GDI0144
Putative RND efflux system, outer membrane lipoprotein, NodT family.
  
  0.531
GDI2439
Putative efflux pump outer membrane protein.
  
  0.526
ttgC
Putative toluene efflux pump outer membrane protein ttgC precursor.
  
  0.520
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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