Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GDI0576 | ahpD | GDI0576 | GDI0575 | Peroxiredoxin protein. | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | 0.900 |
OmpW | ahpD | GDI1275 | GDI0575 | Outer membrane protein. | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | 0.668 |
OmpW | bolA | GDI1275 | GDI1961 | Outer membrane protein. | Putative bolA protein; Belongs to the BolA/IbaG family. | 0.623 |
OmpW | hemA | GDI1275 | GDI2299 | Outer membrane protein. | Putative 5-aminolevulinate synthase. | 0.639 |
OmpW | modD | GDI1275 | GDI0455 | Outer membrane protein. | Putative pyrophosphorylase modD; Belongs to the NadC/ModD family. | 0.613 |
OmpW | nifA | GDI1275 | GDI0429 | Outer membrane protein. | Nif-specific regulatory protein. | 0.668 |
OmpW | nifQ | GDI1275 | GDI0445 | Outer membrane protein. | Protein nifQ. | 0.541 |
OmpW | phbC | GDI1275 | GDI3304 | Outer membrane protein. | Putative poly-beta-hydroxybutyrate polymerase. | 0.668 |
OmpW | rpoN | GDI1275 | GDI0424 | Outer membrane protein. | RNA polymerase sigma-54 factor 1; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.613 |
OmpW | rpoN-2 | GDI1275 | GDI2119 | Outer membrane protein. | Putative RNA polymerase sigma-54 factor 1; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.613 |
ahpD | GDI0576 | GDI0575 | GDI0576 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Peroxiredoxin protein. | 0.900 |
ahpD | OmpW | GDI0575 | GDI1275 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Outer membrane protein. | 0.668 |
ahpD | bolA | GDI0575 | GDI1961 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Putative bolA protein; Belongs to the BolA/IbaG family. | 0.625 |
ahpD | hemA | GDI0575 | GDI2299 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Putative 5-aminolevulinate synthase. | 0.642 |
ahpD | modD | GDI0575 | GDI0455 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Putative pyrophosphorylase modD; Belongs to the NadC/ModD family. | 0.661 |
ahpD | nifA | GDI0575 | GDI0429 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Nif-specific regulatory protein. | 0.671 |
ahpD | nifQ | GDI0575 | GDI0445 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Protein nifQ. | 0.647 |
ahpD | phbC | GDI0575 | GDI3304 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Putative poly-beta-hydroxybutyrate polymerase. | 0.668 |
ahpD | rpoN | GDI0575 | GDI0424 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | RNA polymerase sigma-54 factor 1; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.615 |
ahpD | rpoN-2 | GDI0575 | GDI2119 | Alkylhydroperoxidase protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Putative RNA polymerase sigma-54 factor 1; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.615 |
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