Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ugpC3Sugar ABC transporter ATP-binding protein (UGPC). (379 aa)    
Predicted Functional Partners:
rrnAC0029
Sugar ABC transporter permease protein.
 
  
 0.975
yurM
ABC transporter permease protein.
 
  
 0.967
malFG-6
ABC-type sugar transport systems permease components.
 
  
 0.923
malG
Maltose ABC transporter permease protein.
 
  
 0.912
rrnAC0915
Unknown.
    
 0.835
malE1
Maltose ABC transporter maltose-binding protein.
    
 0.835
cysT1
Sulfate transport system permease protein.
   0.748
malFG-7
Sugar ABC transporter permease protein.
 
   
 0.678
malFG-9
Sugar ABC transport system permease protein.
 
   
 0.637
malFG-8
ABC transporter permease protein.
 
   
 0.627
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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