STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrnAC0050Unknown. (179 aa)    
Predicted Functional Partners:
pknA1
Serine/threonine-protein kinase PknA.
  
 0.925
gbp3
GTP-binding proteinlike.
   
 0.781
nmd3
Putative nonsense mediated mRNA decay protein.
   
 
 0.740
pgsA
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.707
arsC
Putative arsenate reductase.
 
 
 
 0.693
dnaK
Chaperone protein DnaK; Acts as a chaperone.
  
 0.670
rrnAC3302
Unknown.
  
     0.632
rpl40E
50S ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
   
  0.629
htrA1
Serine protease HtrA.
   
 
 0.590
rrnAC0165
Unknown.
  
     0.584
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.