STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl13P50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit (By similarity). Binds to 23S rRNA (145 aa)    
Predicted Functional Partners:
rps13P
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement
 
 
 0.999
rps4P
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
 
 
 0.999
rps11P
30S ribosomal protein S11; Located on the platform of the 30S subunit
 
 
 0.999
rpl18E
50S ribosomal protein L18e; Stabilizes the tertiary rRNA structure within the 23S rRNA domain (domain II) to which it binds
  
 
 0.999
rps9P
annotation not available
 
 
 0.999
rps2P
annotation not available
 
 
 0.999
rpl24E
50S ribosomal protein L24e; Binds to the 23S rRNA
  
 
 0.999
rpl21E
50S ribosomal protein L21e; This is one of 5 proteins that mediate the attachment of the 5S rRNA onto the large ribosomal subunit, stabilizing the orientation of adjacent RNA domains
  
 
 0.999
rpl11P
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
  
 
 0.999
rpl1P
50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release
 
 
 0.999
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui, Haloarcula marismortui ATCC 43049, Haloarcula marismortui ATCC43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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