STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrnAC0082Unknown. (421 aa)    
Predicted Functional Partners:
idsA
Geranylgeranyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
     0.825
rnj
Predicted hydrolase; An RNase that has 5'-3' exonuclease activity. May be involved in RNA degradation; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Archaeal RNase J subfamily.
       0.792
rrnAC0079
Unknown.
 
     0.694
rrnAC0998
Unknown.
  
     0.587
rrnAC2624
ABC transporter substrate-binding protein.
  
     0.573
livK-2
Branched-chain amino acid ABC transporter amino acid-binding protein.
  
     0.572
lbp
Leucine-binding protein.
  
     0.555
csg4
Cell surface glycoprotein related protein; S-layer protein related protein.
  
     0.530
rrnAC0773
Unknown.
  
     0.524
rrnAC3030
Unknown.
  
     0.476
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.