STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrnAC0426Putative sulfatase. (487 aa)    
Predicted Functional Partners:
rrnAC0427
Putative polysaccharide biosynthesis protein.
 
   
 0.814
rrnAC1818
Putative hydrolase.
 
 
 0.770
yidJ
Putative sulfatase.
 
    
0.732
arcB
Ornithine carbamoyltransferase.
   
    0.698
ywfD1
Glucose 1-dehydrogenase.
  
 
 0.658
fabG4
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
 0.649
fabG6
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
 0.646
sdr
Short chain dehydrogenase.
  
 
 0.644
tbpE
TATA-box binding protein E; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
   0.602
bdhA
D-beta-hydroxybutyrate dehydrogenase.
   
 
 0.596
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.