STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdHAdhesion protein. (361 aa)    
Predicted Functional Partners:
zurM
ABC transporter permease protein.
 
 
 0.999
zurA
Zinc uptake system ATP-binding protein ZurA.
 
 
 0.999
cobW1
Cobalamin synthesis protein/P47K.
  
  
 0.890
sirR
Transcription repressor.
  
  
 0.783
phoX
Phosphate ABC transporter phosphate-binding protein.
     
 0.747
cbiM
Cobalamin biosynthesis protein CbiM.
 
   
 0.731
cbiQ1
Cobalt transport protein.
     
 0.712
fecE
Iron (III) ABC transporter ATP-binding protein.
 
  
 0.658
copA4
Copper-transporting ATPase CopA.
     
 0.548
birA
biotin-(acetyl-CoA carboxylase) ligase.
 
     0.543
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.